MOMD:
Mouse Oral Microbiome Database
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MOMD Genome Explorer
Selected genome:
Shigella flexneri
19428wH2_1568
Change genome:
Available genomes
1. Actinomyces bowdenii WMus004.1
2. Bacteroides acidifaciens 19428wH3_P2318
3. Bacteroides acidifaciens 8_33DSS_C5_S8
4. Citrobacter koseri 19428wH4_BL23
5. Dysgonomonas mossii 19428wE4_P11
6. Enterococcus gallinarum 19428wB3_C2
7. Enterococcus gallinarum ENT.1
8. Escherichia coli 19428wD4_HM13
9. Gemella palaticanis CIP106318T.1
10. Gemella sp. 19428wG2_WT2a
11. Gemella sp. GH3.1
12. Gemella sp. GL1.1
13. Granulicatella sp. 19428wC4_WM01
14. Jeotgalicoccus nanhaiensis 19428wE5_W307
15. Lactobacillus johnsonii 19428wE2_CC3
16. Lactobacillus murinus LAC.1
17. Ligilactobacillus murinus 19428wF2_HT12
18. Ligilactobacillus murinus 2_2BalbC1BO2_S2
19. Mammaliicoccus lentus 19428wC1_HT5
20. Mammaliicoccus lentus 19428wG1_AE2
21. Mammaliicoccus lentus 3_3BalbC2O2_S3
22. Mammaliicoccus sciuri 19428wE1_BL01
23. Mammaliicoccus sciuri ACT.1
24. Microbacterium paludicola 19428wA4_P1012
25. Micrococcus aloeverae 19428wE3_DK2
26. Micrococcus yunnanensis 19428wG4_IOV6
27. Muribacter muris 19428wC3_WT12
28. Muribacter muris 7_18CXCR221ANO_S7
29. Neisseria sp. 19428wB4_WF04
30. Parabacteroides goldsteinii 19428wG3_P14
31. Pasteurella sp. 19428wF3_WM03
32. Proteus mirabilis 19428wB5_irhom_Sw
33. Providencia alcalifaciens WMus003.1
34. Rothia nasimurium 19428wA5_irhom_31
35. Sanguibacter inulinus DSM100099.1
36. Shigella flexneri 19428wH2_1568
37. Staphylococcus arlettae 19428wH1_IOV5
38. Staphylococcus aureus 19428wD1_P36
39. Staphylococcus aureus 4_5BalbC4O2_S4
40. Staphylococcus aureus STF.1
41. Staphylococcus capitis GW2.1
42. Staphylococcus saprophyticus 19428wB1_WM06
43. Staphylococcus warneri 19428wF1_P912
44. Staphylococcus xylosus 19428wA1_WT6
45. Streptococcus acidominimus 19428wB2_HT4
46. Streptococcus acidominimus 6_8CXCR23O2_S6
47. Streptococcus cuniculi 19428wD2_WM131
48. Streptococcus danieliae 1_1BalbC1O2_S1
49. Streptococcus danieliae STR.1
50. Streptococcus sp. 19428wA2_WM07
51. Streptococcus sp. 19428wC2_LYSM12
52. Streptococcus sp. 19428wD3_AN2
from a total of 52 genomes
Available tools:
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PROKKA Annotation
NCBI Annotation
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Genome Info
Taxon Description
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NCBI Genome Annotation:
contigs: 237
bases: 5,139,722 bps
CDS: 5,034
rRNA: 13
tRNA: 87
tmRNA: 1
Total number of protein coding genes annotated/found:
4,833
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Items 21 - 40
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Molecule ^
PID/GenBank ID *
Sequences
Size (NA/AA) ^
Range ^
Gene Product Name
SEQF5015|JADGKR010000001.1
MBF0739035.1
Genome Viewer
NA
AA
444/148
23546-23103
low molecular weight protein-tyrosine-phosphatase Wzb
SEQF5015|JADGKR010000001.1
MBF0739036.1
Genome Viewer
NA
AA
1140/380
24691-23552
polysaccharide export protein Wza
SEQF5015|JADGKR010000001.1
MBF0739037.1
Genome Viewer
NA
AA
150/50
25000-25149
hypothetical protein
SEQF5015|JADGKR010000001.1
MBF0739038.1
Genome Viewer
NA
AA
1584/528
25349-26932
TerC family protein
SEQF5015|JADGKR010000001.1
MBF0739039.1
Genome Viewer
NA
AA
1854/618
29059-27206
outer membrane assembly protein AsmA
SEQF5015|JADGKR010000001.1
MBF0739040.1
Genome Viewer
NA
AA
582/194
29662-29081
dCTP deaminase
SEQF5015|JADGKR010000001.1
MBF0739041.1
Genome Viewer
NA
AA
642/214
30395-29754
uridine kinase
SEQF5015|JADGKR010000001.1
MBF0739042.1
Genome Viewer
NA
AA
3318/1106
30713-34030
diguanylate cyclase
SEQF5015|JADGKR010000001.1
MBF0739043.1
Genome Viewer
NA
AA
858/286
34926-34069
DNA-3-methyladenine glycosylase 2
SEQF5015|JADGKR010000001.1
MBF0739044.1
Genome Viewer
NA
AA
1353/451
35060-36412
molecular chaperone
SEQF5015|JADGKR010000001.1
MBF0739045.1
Genome Viewer
NA
AA
1941/647
38364-36424
protein kinase YegI
SEQF5015|JADGKR010000001.1
MBF0739046.1
Genome Viewer
NA
AA
762/254
39122-38361
protein-serine/threonine phosphatase PphC
SEQF5015|JADGKR010000001.1
MBF0739047.1
Genome Viewer
NA
AA
660/220
39778-39119
VWA domain-containing protein
SEQF5015|JADGKR010000001.1
MBF0739048.1
Genome Viewer
NA
AA
60/20
40058-39999
type I toxin-antitoxin system toxin IbsA
SEQF5015|JADGKR010000001.1
MBF0739049.1
Genome Viewer
NA
AA
57/19
40387-40331
type I toxin-antitoxin system Ibs family toxin
SEQF5015|JADGKR010000001.1
MBF0739050.1
Genome Viewer
NA
AA
57/19
40715-40659
type I toxin-antitoxin system Ibs family toxin
SEQF5015|JADGKR010000001.1
MBF0739051.1
Genome Viewer
NA
AA
1248/416
40994-42241
multidrug efflux RND transporter subunit MdtA
SEQF5015|JADGKR010000001.1
MBF0739052.1
Genome Viewer
NA
AA
3123/1041
42241-45363
multidrug efflux RND transporter permease subunit MdtB
SEQF5015|JADGKR010000001.1
MBF0739053.1
Genome Viewer
NA
AA
3078/1026
45364-48441
multidrug efflux RND transporter permease subunit MdtC
SEQF5015|JADGKR010000001.1
MBF0739054.1
Genome Viewer
NA
AA
1416/472
48442-49857
MFS transporter
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Items 21 - 40
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Copyright 2020 Forsyth Institute
Page last updated: July 7, 2021 08:39:35
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